rpy2安装错误(操作系统:linux mint 17 | R 3.1.2 | python 2.7.6)

2023-12-20

当我运行“sudo pip install rpy2”时,出现很多编译错误。

这是所有错误的完整转储 http://www.pastebin.ca/2878069这是一个例子,除了:

 Compilation parameters for rpy2's C components:
        include_dirs    = ['/usr/share/R/include']
        library_dirs    = ['/usr/lib/R/lib']
        libraries       = ['R', 'pcre', 'lzma', 'bz2', 'z', 'rt', 'dl', 'm']
        extra_link_args = ['-Wl,--export-dynamic', '-fopenmp']

R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
building 'rpy2.rinterface._rinterface' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/usr/share/R/include -I/usr/include/python2.7 -c ./rpy/rinterface/_rinterface.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o
In file included from /usr/share/R/include/R.h:46:0,
                 from ./rpy/rinterface/_rinterface.h:8,
                 from ./rpy/rinterface/_rinterface.c:58:
/usr/share/R/include/R_ext/Memory.h:40:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 int R_gc_running();
 ^
In file included from ./rpy/rinterface/_rinterface.h:9:0,
                 from ./rpy/rinterface/_rinterface.c:58:
/usr/share/R/include/Rinternals.h:831:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 const char *R_curErrorBuf();
 ^
In file included from ./rpy/rinterface/_rinterface.c:70:0:
/usr/share/R/include/Rinterface.h:129:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 extern void (*ptr_R_ProcessEvents)();
 ^
In file included from ./rpy/rinterface/_rinterface.c:79:0:
/usr/share/R/include/R_ext/Rdynload.h:32:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
 typedef void * (*DL_FUNC)();
 ^
./rpy/rinterface/_rinterface.c:86:31: fatal error: readline/readline.h: No such file or directory
 #include <readline/readline.h>
                               ^
compilation terminated.

一些背景。之前 ipython Notebook 开发版本的安装失败,并已恢复到 pip 存储库版本。不确定这是否起作用。在此之前能够让 R magic 发挥作用。

在尝试重新安装之前,我已确保运行“apt-get update”、“pip uninstall rpy2”、“apt-get purge python-rpy2 && apt-get remove python-rpy2”。为了检查是否有任何残留文件,我在 ipython 中运行了“import rpy2”,这导致了模块未找到错误(很好,没有任何残留)。

不确定从哪里开始排除故障。感谢您的建议。


编辑:2014 年 11 月 26 日

安装以下依赖项后它可以工作:

  • apt-get 安装 libreadline-dev
  • apt-get install r-base r-base-dev python-dev python-setuptools

您需要 readline 库的标头:

apt-get install libreadline-dev
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