我有这段代码,用于将 DNA 字符串转换为密码子列表,然后将此列表转换为具有各自氨基酸的字符串。
然而,当我运行代码并且 DNA 字符串以一对核苷酸(例如 CT)而不是三联体结尾时,代码不会生成氨基酸序列。正如您在输出中看到的。
from collections import defaultdict
from collections import Counter
dna_sequence = "GAGCGTCTGCTCCGTGTATAAGCCACGTCGGAGCT"
codons = [dna_sequence[i:i+3]
for i in range (0, len(dna_sequence), 3)]
print(codons)
genetic_code = {
"GCG" :"A","GCA" :"A","GCT" :"A","GCC" :"A",
"AGG" :"R","AGA" :"R","CGG" :"R", "CGA" :"R","CGT" :"R","CGC" :"R",
"AAT" :"N","AAC" :"N",
"GAT" :"D", "GAC":"D", "TGT" :"C","TGC" :"C",
"TGA" :"*","TAG" :"*","TAA" :"*", # * Stop codon
"CAG" :"Q","CAA" :"Q",
"GAG" :"E","GAA" :"E",
"GGG" :"G","GGA" :"G","GGT" :"G","GGC" :"G",
"CAT" :"H","CAC" :"H",
"ATA" :"I","ATT" :"I","ATC" :"I",
"TTG" :"L","TTA" :"L","CTG" : "L","CTA" :"L","CTT" :"L","CTC" :"L",
"AAG" :"K","AAA" :"K",
"ATG" :"M" , # Start codon
"TTT" :"F" ,"TTC" :"F" ,
"CCG" :"P" ,"CCA" :"P" ,"CCT" :"P" ,"CCC" :"P" ,
"AGT" :"S" ,"AGC" :"S" ,"TCG" :"S" ,"TCA" :"S" ,"TCT" :"S" ,"TCC" :"S" ,
"ACG" :"T" ,"ACA" :"T" ,"ACT" :"T" ,"ACC" :"T" ,
"TGG" :"W" ,
"TAT" :"Y" ,"TAC" :"Y" ,
"GTG" :"V" ,"GTA" :"V" ,"GTT" :"V" ,"GTC" :"V"
}
def codon_seq(seq):
tmpList = []
for i in range(0, len(seq) - 2, 3):
if genetic_code [seq[i:i + 3]]:
tmpList.append(seq[i:i + 3])
print(tmpList)
def amino_seq(seq):
protein =""
if len(seq)%3 == 0:
for i in range(0, len(seq), 3):
codon = seq[i:i + 3]
protein+= genetic_code[codon]
return protein
print("Aminoacids: ")
amino_seq(dna_sequence)
OUTPUT:
密码子:
['GAG'、'CGT'、'CTG'、'CTC'、'CGT'、'GTA'、'TAA'、'GCC'、'ACG'、'TCG'、'GAG'、'CT']
氨基酸:
”
我想找到一种解决方案,以便我可以使用字符串的最后两个核苷酸来预测下一个氨基酸,选择以这两个核苷酸开头的密码子(遗传代码)并选择一个随机数。我怎么能这么做呢?请任何建议。